CSE 672 Bayesian Vision
University at Buffalo SUNY
Syllabus for Spring 2008
Last updated: 9 April 2008


News:

  1. 4/9 -- UPDATE on end of term. The last day of classes is April 28th, not 30th. So, we will need to hold the poster session on April 28th during class-time. Final project writeups are still due on 5/5 9AM.
  2. 4/2 -- Lecture Notes 5 and 6 uploaded.
  3. 2/27 -- Lecture Notes 4 uploaded.
  4. 2/27 -- Assignment 2 extended, due Mar. 18
  5. 2/18 -- Assignment 2 issued, due Mar. 5.
  6. 2/8 -- Lecture Notes 3 uploaded.
  7. 1/24 -- Assignment 1 issued (on UB Learns) due Feb 11.
  8. 1/24 -- Lecture Notes 2 uploaded.
  9. 1/15 -- Added an article on natural image statistics (Field, 1987).
  10. 1/15 -- PDF References uploaded to UBLearns.
  11. 1/15 -- Lecture 1 Notes uploaded to UBLearns.
  12. 1/13 -- Syllabus is uploaded on website.


Instructor: Jason Corso (jcorso@cse)

Course Webpage: http://www.cse.buffalo.edu/~jcorso/t/2008spring_vbi.

Syllabus: http://www.cse.buffalo.edu/~jcorso/t/2008spring_vbi/syllabus.pdf.

Downloadable course material can be found on the UBLearns site.

Meeting Times: MW 3-4:20

Location: Bell 242

Office Hours: Tuesday 1-2:30 or by appointment

Main Course Material

Course Overview: The course takes an in-depth look at various Bayesian methods in computer and medical vision. Through the language of Bayesian inference, the course will present a coherent view of the approaches to various key problems such as detecting objects in images, segmenting object boundaries, and recognizing objects. The course is roughly partitioned into two parts: modeling and inference. In the first half, it will cover both classical models such as weak membrane models and Markov random fields as well as more recent models such as conditional random fields, latent Dirichlet allocation, and topic models. In the second half, it will focus on inference algorithms. Methods include PDE boundary evolution algorithms such as region competition, discrete optimization methods such as graph-cuts and graph-shifts, and stochastic optimization methods such as data-driven Markov chain Monte Carlo. An emphasis will be placed on both the theoretical aspects of this field as well as the practical application of the models and inference algorithms.

Course Project: Each student will be required to implement a course project that is either a direct implementation of a method discussed during the semester or new research in Bayesian vision. A paper describing the project is required at the end of the semester (8-10 pages two column IEEE format) and we will have an open-house poster session to present the projects. Working project demos are suggested but not required for the poster session.

Prerequisites: It is assumed that the students have taken introductory courses in pattern recognition (CSE 555), and computer vision (CSE 573). Machine learning (CSE 574) is suggested but not required. Permission of the instructor is required if these pre-requisites have not been met.

Course Goals: After taking the course, the student should have a clear understanding of the state-of-the-art models and inference algorithms for solving vision problems within a Bayesian methodology. Through completing the course project, the student will also have a deep understanding of the low-level details of a particular model/algorithm.

Textbooks: There is unfortunately no complete textbook for this course. The required material will either be distributed by the instructor or found on reserve at the UB Library. Recommended textbooks are

  1. Li, S. Markov Random Field Modeling in Image Analysis. Springer-Verlag. 2001.

  2. Winkler, G. Image Analysis, Random Fields and Markov Chain Monte Carlo Methods: A Mathematical Introduction. Springer. 2006.

  3. Chalmond, B. Modeling and Inverse Problems in Image Analysis. Springer. 2003.

  4. Bishop, C. M. Pattern Recognition and Machine Learning. Springer. 2007.

Grading: Letter grading distributed as follows:

Homeworks: There will be three homeworks, equally weighted. They will cover both theoretical and practical (implementation) aspects of the material. Students may collectively discuss the homework problems, but they must write them independently. No sharing of written/typed materials of any sort is allowed.

Programming Language: Student choice for homeworks and project (generally, Matlab, Java, or C/C++). However, no platform-specific libraries/packages are permissible.

Course Outline

The course is roughly divided into two parts. In the first part, we discuss various modeling and associated learning algorithms. In the second part, we discuss the computing and inference algorithms which use the previously discussed models to solve complex inference problems in vision. The topic outline follows; citations are given and an underlined citation indicates a primary (must-read) one.

  1. Introduction.

    1. Discussion of Bayesian inference in the context of vision problems. [Winkler, 2006, Chapter 1] [Chalmond, 2003, Chapter 1] [Hanson, 1993]

    2. Presentation of relevant empirical findings concerning the statistics of images motivating the Bayesian approach. [Field, 1994] [Field, 1987] [Julesz, 1981] [Kersten, 1987] [Ruderman, 1994] [Simoncelli & Olshausen, 2001] [Torralba & Oliva, 2003] [Wu et al., 2007]

    3. Model classes: discriminative, generative and descriptive. [Zhu, 2003]

  2. Modeling and Learning.

    1. Descriptive models on regular lattices.

      1. Markov random field models and Gibbs fields. [Li, 2001, §1.2] [Winkler, 2006, §2,3] [Dubes & Jain, 1989]
      2. The Hammersley-Clifford theorem.
      3. Bayes MRF Estimators [Winkler, 2006, §1.4] [Li, 2001, §1.5] [Geman & Geman, 1984]
      4. Examples:
        1. Auto-Models [Besag, 1974] [Li, 2001, §1.3.1, 2.3, 2.4] [Winkler, 2006, §15]
        2. Weak membrane models, Mumford-Shah, TV, etc.
      5. Applications:
        1. Image Restoration and Denoising [Li, 2001, §2.2]
        2. Edge Detection and Line Processes [Li, 2001, §2.3] [Geman & Geman, 1984]
        3. Texture [Li, 2001, §2.4] [Winkler, 2006, §15,16]
      6. MRF Parameter Estimation [Li, 2001, §6] [Winkler, 2006, §5,6]

        1. Maximum-Likelihood
        2. Pseudo-Likelihood
        3. Gibbs Sampler (and brief introduction to MCMC)

    2. Descriptive Models on Regular Lattices: Advanced Topics

      1. Discontinuities and Smoothness Priors [Li, 2001, §4]

      2. FRAME and Minimax entropy learning of potential functionals. [Zhu et al., 1998] [Zhu et al., 1997] [Coughlan & Yuille, 2003]

      3. Hidden Markov random fields. [Zhang et al., 2001]

      4. Conditional random fields. [Lafferty et al., 2001] [Kumar & Hebert, 2003] [Wallach, 2004]

      5. MRF as a foundation for multiresolution computing. [Gidas, 1989]

    3. Descriptive and Generative Models on Irregular Graphs and Hierarchies.

      1. Markov random field hierarchies. [Derin & Elliott, 1987] [Krishnamachari & Chellappa, 1995] [Chardin & Perez, 1999]

      2. Over-Complete Bases and Sparse Coding [Zhu, 2003, §6] [Olshausen & Field, 1997] [Coifman & Wickerhauser, 1992]

      3. Textons [Julesz, 1981] [Zhu et al., 2005] [Malik et al., 1999]

      4. And-Or graphs and context-sensitive grammars. [Zhu & Mumford, 2006] [Han & Zhu, 2005]

      5. Dirichlet Processes (DP) and Bayesian Clustering [Ferguson, 1973]

      6. Latent Dirichlet Allocation, hierarchical DP and author-topic models. [Blei et al., 3] [Teh et al., 2005] [Steyvers et al., 2004]

      7. Correspondence LDA [Blei & Jordan, 2003]

    4. Integrating Descriptive and Generative Models [Guo et al., 2006]

  3. Inference Algorithms.

    1. Boundary methods.

      1. Level set evolution. [Chan & Vese, 2001]
      2. Region competition algorithm. [Zhu & Yuille, 1996a]

    2. Discrete Deterministic Inference.

      1. Graph-Cuts: $ \alpha$ -Expansion algorithm and min-cut/max-flow relationship. [Boykov et al., 2001] [Kolmogorov & Zabih, 2002a]
      2. Graph-Shifts algorithm. [Corso et al., 2007] [Corso et al., 2008]
      3. Sum-Product algorithm (exact Belief Propagation). [Bishop, 2006, §8] [Yedidia et al., 2001] [Frey & MacKay, 1997] [Felzenszwalb & Huttenlocher, 2006]

      4. Generalized Belief Propagation. [Yedidia et al., 2005] [Yedidia et al., 2000]

      5. Inference on And-Or graphs. [Zhu & Mumford, 2006] [Han & Zhu, 2005]

    3. Stochastic Inference. [Forsyth et al., 2001]

      1. Gibbs sampling. [Geman & Geman, 1984] [Winkler, 2006, §5,7]
      2. Metropolis-Hastings and Markov chain Monte Carlo methods. [Winkler, 2006, §10] [Tierney, 1994] [Liu, 2002]
      3. Data-Driven MarkovMCMC algorithm. [Tu & Zhu, 2002] [Tu et al., 2005] [Green, 1995]
      4. Swendsen-Wang algorithm. [Swendsen & Wang, 1987] [Barbu & Zhu, 2005] [Barbu & Zhu, 2004]
      5. Sequential MCMC and Particle Filters. [Isard & Blake, 1998] [Liu & Chen, 1998]

Calendar

The calendar will be populated as the semester proceeds based on the above course outline and our progress.

  Week Monday
Wednesday
Assignments
1 1/14 Introduction. Vision as Bayesian Inference. Statistics of Natural Images I (Field 1987, Kersten 1987)  
2 1/21 MLK Day - No Class Statistics of Natural Images II (Field 1994, Ruderman 1994, Wu 2007) Asgn. 1 Out
3 1/28 Introduction to MRF Models and Gibbs Fields. (Winkler 3, Li 1) Gibbs Fields, Potentials, and Classical Models.  
4 2/4 Classical Models and Hammersley-Clifford Hammersley-Clifford and Applications Project Proposal Due
5 2/11 Applications Markov Chains and Stochastic Processes (Winkler 4,5) Asgn. 1 Due
6 2/18 Homogeneous Markov Chains, Invariance, Detailed Balance. Class Cancelled Asgn. 2 Out
7 2/25 Gibbs Sampling and Simulated Annealing Simulated Annealing and ICM  
8 3/3 Parameter Estimation. MLE. (Li 6, Zhu FRAME, Winkler 17-19) MLE and Pseudo-Likelihood Project Milestone 1 Due
  3/10 Spring Recess - No Classes  
9 3/17 Coding Method, Mean Field, and LS LS and Maximum Entropy Asgn. 2 Due
10 3/24 FRAME FRAME, Minimax Entropy and Feature Pursuit  
11 3/31 Individual Project Meetings Renormalization Group Algorithms Milestone 2 Due
12 4/7 Dr. Jake Aggarwal Lecture Hidden Markov Random Fields (Ricardo)  
13 4/14 Belief Propagation I (exact, approximate, loopy) CRF/DRF (OR) BP II (Kikuchi Approximations, beyond pairwise) (Ifeoma)  
14 4/21 Graph-Shifts Graph-Cuts (α-expansion)  
15 4/28 Public Poster / Demo Session for Projects Milestone 3 Due

Project

The goal of the project is to have each student (or pair of students) study and implement one particular model-inference pair. Below is a list of possible projects, but the student is encouraged to design a project of their own device. The ultimate goal is for each student to do some new work. Within reason, camera and video equipment will be made available to the students from the Vision and Perceptual Machines Lab (Dr. Corso's Lab in the Commons CSE Research Area). Suitable arrangements should be made with the instructor to facilitate equipment use.

List of Possible Projects

Project Schedule

2/4
Project proposal due in class. 1-page description of the proposed project and the type of problem/data. It should include three milestones in planning.

3/5
Milestone 1 Report due in class. (1-paragraph)

3/31
Milestone 2 Report due in class. (1-paragraph)

4/28
Final milestone and public poster / demo session.

5/5 9AM
Project write-up and source code are due.

Project Write-Up

The write-up will be in standard two-column IEEE journal format at a maximum of 10 pages. It should be approached as a standard paper containing introduction and related work, methodology, results, and discussion.

Additional Information

Similar Courses at Other Institutions: (incomplete and in no important order)

Course Bibliography

Most items below have been cited above, but there are also some additional references that extend the content of the course. When available, PDFs of articles have been uploaded to the UBLearns ``Course Documents'' section. The naming convention is the first two characters of (up to) the first three authors following by an acronym for the venue (e.g., CVPR for Computer Vision and Pattern Recognition) followed by the year. So, the Geman and Geman 1984 PAMI article is GeGePAMI1984.pdf.

Bibliography

Barbu & Zhu, 2004
Barbu, A., & Zhu, S. C. 2004.
Multigrid and Multi-level Swendsen-Wang Cuts for Hierarchic Graph Partitions.
Pages 731-738 of: Proceedings of IEEE Conference on Computer Vision and Pattern Recognition, vol. 2.

Barbu & Zhu, 2005
Barbu, A., & Zhu, S. C. 2005.
Generalizing Swendsen-Wang to Sampling Arbitrary Posterior Probabilities.
IEEE Transactions on Pattern Analysis and Machine Intelligence, 27(8), 1239-1253.

Besag, 1974
Besag, J. 1974.
Spatial interaction and the statistical analysis of lattice systems (with discussion).
J. Royal Stat. Soc., B, 36, 192-236.

Besag, 1986
Besag, J. 1986.
On The Statistical Analysis of Dirty Pictures (with discussion).
Journal of the Royal Statistical Society [Ser. B], 48, 259-302.

Bishop, 2006
Bishop, C. M. 2006.
Pattern Recognition and Machine Learning.
Springer.

Bishop & Winn, 2000
Bishop, C. M., & Winn, J. M. 2000.
Non-linear Bayesian Image Modelling.
Pages 3-17 of: European Conference on Computer Vision, vol. 1.

Blei & Jordan, 2003
Blei, D. M., & Jordan, M. I. 2003.
Modeling Annotated Data.
In: Proceedings of SIGIR.

Blei et al., 3
Blei, D. M., Ng, A. Y., & Jordan, M. I. 3.
Latent Dirichlet Allocation.
Journal of Machine Learning Research, 2003, 993-1022.

Bouman & Shapiro, 1994
Bouman, C. A., & Shapiro, M. 1994.
A multiscale random field model for Bayesian image segmentation.
Image Processing, IEEE Transactions on, 3(2), 162-177.

Boykov et al., 2001
Boykov, Y., Veksler, O., & Zabih, R. 2001.
Fast Approximate Energy Minimization via Graph Cuts.
IEEE Transactions on Pattern Analysis and Machine Intelligence, 23(11), 1222-1239.

Chalmond, 2003
Chalmond, B. 2003.
Modeling and Inverse Problems in Image Analysis.
Applied Mathematical Sciences, vol. 155.
Springer.

Chan & Vese, 2001
Chan, T. F., & Vese, L. A. 2001.
Active Contours Without Edges.
IEEE Transactions on Image Processing, 10(2), 266-277.

Chardin & Perez, 1999
Chardin, A., & Perez, P. 1999.
Semi-iterative Inferences with Hierarchical Energy-Based Models for Image Analysis.
Energy Minimization Methods in Computer Vision and Pattern Recognition: Second International Workshop, EMMCVPR'99, York, UK, July 1999. Proceedings, 730-730.

Coifman & Wickerhauser, 1992
Coifman, R. R., & Wickerhauser, M. V. 1992.
Entropy-based Algorithms for Best Basis Selection.
IEEE Transactions on Information Theory, 38(2), 713-718.

Cootes & Taylor, 2004
Cootes, T.F., & Taylor, C.J. 2004.
Statistical Models of Appearance for Computer Vision.
Tech. rept. Imaging Science and Biomedical Engineering, University of Manchester.

Corso et al., n.d.
Corso, J. J., Sharon, E., Dube, S., El-Saden, S., Sinha, U., & Yuille, A.
Efficient Multilevel Brain Tumor Segmentation with Integrated Bayesian Model Classification.
IEEE Transactions on Medical Imaging.
(in press).

Corso et al., 2006
Corso, J. J., Sharon, E., & Yuille, A. 2006.
Multilevel Segmentation and Integrated Bayesian Model Classification with an Application to Brain Tumor Segmentation.
Pages 790-798 of: Medical Image Computing and Computer Assisted Intervention, vol. 2.

Corso et al., 2007
Corso, J. J., Tu, Z., Yuille, A., & Toga, A. W. 2007.
Segmentation of Sub-Cortical Structures by the Graph-Shifts Algorithm.
Pages 183-197 of: Karssemeijer, N., & Lelieveldt, B. (eds), Proceedings of Information Processing in Medical Imaging.

Corso et al., 2008
Corso, J. J., Tu, Z., & Yuille, A. 2008.
MRF Labeling with a Graph-Shifts Algorithm.
In: Proceedings of International Workshop on Combinatorial Image Analysis.
(to appear).

Coughlan & Yuille, 2003
Coughlan, J. M., & Yuille, A. L. 2003.
Algorithms from Statistical Physics for Generative Models of Images.
Image and Vision Computing, Special Issue on Generative-Model Based Vision, 21(1), 29-36.

Derin & Elliott, 1987
Derin, H., & Elliott, H. 1987.
Modeling and Segmentation of Noisy and Texture Images Using Gibbs Random Fields.
IEEE Transactions on Pattern Analysis and Machine Intelligence, 9(1), 39-55.

Dubes & Jain, 1989
Dubes, R. C., & Jain, A. K. 1989.
Random field models in image analysis.
Journal of Applied Statistics, 16(2), 131 - 164.

Fei-Fei & Perona, 2005
Fei-Fei, L., & Perona, P. 2005.
A Bayesian Hierarchical Model for Learning Natural Scene Categories.
In: Proceedings of IEEE Conference on Computer Vision and Pattern Recognition.

Felzenszwalb & Huttenlocher, 2006
Felzenszwalb, P. F., & Huttenlocher, D. P. 2006.
Efficient Belief Propagation for Early Vision.
International Journal of Computer Vision, 70(1).

Ferguson, 1973
Ferguson, T. S. 1973.
A Bayesian Analysis of Some Nonparametric Problems.
The Annals of Statistics, 1(2), 209-230.

Field, 1987
Field, D. J. 1987.
Relations between the statistics of natural images and the response properties of cortical cells.
Journal of the Optical Society of America A, 4, 2379-2394.

Field, 1994
Field, D. J. 1994.
What is the goal of sensory coding?
Neural Computation, 6, 559-601.

Forsyth et al., 2001
Forsyth, D., Haddon, J., & Ioffe, S. 2001.
The Joy of Sampling.
International Journal of Computer Vision, 41(1), 109-134.

Frey & MacKay, 1997
Frey, B. J., & MacKay, D. 1997.
A Revolution: Belief Propagation in Graphs with Cycles.
In: Proceedings of Neural Information Processing Systems (NIPS).

Geman & Geman, 1984
Geman, S., & Geman, D. 1984.
Stochastic Relaxation, Gibbs Distributions, and Bayesian Restoration of Images.
IEEE Transactions on Pattern Analysis and Machine Intelligence, 6, 721-741.

Gidas, 1989
Gidas, B. 1989.
A Renormalization Group Approach to Image Processing Problems.
IEEE Transactions on Pattern Analysis and Machine Intelligence, 11(2), 164-180.

Green, 1995
Green, P. J. 1995.
Reversible Jump Markov Chain Monte Carlo Computation and Bayesian Model Determination.
Biometrika, 82(4), 711-732.

Guo et al., 2003
Guo, C. E., Zhu, S. C., & Wu, Y. N. 2003.
Modeling Visual Patterns by Integrating Descriptive and Generative Models.
International Journal of Computer Vision, 53(1), 5-29.

Guo et al., 2006
Guo, C. E., Zhu, S. C., & Wu, Y. N. 2006.
Primal Sketch: Integrating Texture and Structure.
Computer Vision and Image Understanding.
(to appear).

Han & Zhu, 2005
Han, F., & Zhu, S. C. 2005.
Bottom-Up/Top-Down Image Parsing by Attribute Graph Grammar.
Pages 1778-1785 of: Proceedings of International Conference on Computer Vision, vol. 2.

Hanson, 1993
Hanson, K. M. 1993.
Introduction to Bayesian image analysis.
Medical Imaging: Image Processing, Proc. SPIE 1898, 716-731.

Held et al., 1997
Held, K., Kops, E. R., Krause, B. J., Wells, W. M., III., Kikinis, R., & Muller-Gartner, H. W. 1997.
Markov random field segmentation of brain MR images.
Medical Imaging, IEEE Transactions on, 16(6), 878-886.

Isard & Blake, 1998
Isard, M., & Blake, A. 1998.
CONDENSATION - conditional density propagation for visual tracking.
International Journal of Computer Vision, 29(1), 5-28.

Julesz, 1981
Julesz, B. 1981.
Textons, the elements of texture perception and their interactions.
Nature, 290, 91-97.

Kersten, 1987
Kersten, D. 1987.
Predictability and Redundancy of Natural Images.
Journal of the Optical Society of America, A 4(12), 2395-2400.

Kolmogorov & Zabih, 2002a
Kolmogorov, V., & Zabih, R. 2002a.
What Energy Functions Can Be Minimized via Graph Cuts?
Pages 65-81 of: European Conference on Computer Vision, vol. 3.

Kolmogorov & Zabih, 2002b
Kolmogorov, Vladimir, & Zabih, Ramin. 2002b.
Multicamera Scene Reconstruction via Graph-Cuts.
Pages 82-96 of: European Conference on Computer Vision.

Krishnamachari & Chellappa, 1995
Krishnamachari, S., & Chellappa, R. 1995.
Multiresolution GMRF models for texture segmentation.
vol. 4.

Kumar & Hebert, 2003
Kumar, S., & Hebert, M. 2003.
Discriminative Random Fields: A Discriminative Framework for Contextual Interaction in Classification.
In: International Conference on Computer Vision.

Lafferty et al., 2001
Lafferty, J., McCallum, A., & Pereira, F. 2001.
Conditional Random Fields: Probabilistic Models for Segmenting and Labeling Sequence Data.
In: Proceedings of International Conference on Machine Learning.

Lee et al., 2005
Lee, C. H., Schmidt, M., Murtha, A., Bistritz, A., Sander, J., & Greiner, R. 2005.
Segmenting Brain Tumor with Conditional Random Fields and Support Vector Machines.
In: Proceedings of Workshop on Computer Vision for Biomedical Image Applications at International Conference on Computer Vision.

Lee & Crawford, 2005
Lee, S., & Crawford, M. M. 2005.
Unsupervised multistage image classification using hierarchical clustering with a bayesian similarity measure.
Image Processing, IEEE Transactions on, 14(3), 312-320.

Li, 2001
Li, S. Z. 2001.
Markov Random Field Modeling in Image Analysis. 2nd edn.
Springer-Verlag.

Liu, 2002
Liu, J. S. 2002.
Monte Carlo Strategies in Scientific Computing.
Springer.

Liu & Chen, 1998
Liu, J. S., & Chen, R. 1998.
Sequential Monte Carlo Methods for Dynamic Systems.
Journal of the American Statistical Society, 93(443), 1032-1044.

MacEachern & Muller, 1998
MacEachern, S. N., & Muller, P. 1998.
Estimating Mixture of Dirichlet Process Models.
Journal of Computational and Graphical Statistics, 7(2), 223-238.

Malik et al., 1999
Malik, Jitendra, Belongie, Serge, Shi, Jianbo, & Leung, Thomas. 1999.
Textons, Contours, and Regions: Cue Combination in Image Segmentation.
In: International Conference on Computer Vision.

Naphade & Huang, 2001
Naphade, M. R., & Huang, T. S. 2001.
A Probabilistic Framework for Semantic Video Indexing, Filtering, and Retrieval.
IEEE Transactions on Multimedia, 3(1), 141-151.

Olshausen & Field, 1997
Olshausen, B. A., & Field, D. J. 1997.
Sparse Coding with an Overcomplete Basis Set: A Strategy Employed by V1?
Vision Research, 37(23), 3311-3325.

Raj & Zabih, 2005
Raj, A., & Zabih, R. 2005.
A Graph Cut Algorithm for Generalized Image Deconvolution.
In: Proceedings of International Conference on Computer Vision.

Ranganathan, 2004
Ranganathan, A. 2004 (September).
The Dirichlet Process Mixture (DPM) Model.

Richardson & Green, 1997
Richardson, S., & Green, P. J. 1997.
On Bayesian Analysis of Mixtures With an Unknown Number of Components.
Journal of the Royal Statistical Society - Series B, 59(4), 731-758.

Ruderman, 1994
Ruderman, D. L. 1994.
The statistics of natural images.
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Schaap et al., 2007
Schaap, M., Smal, I., Metz, C., Walsum, T. van, & Niessen, W. 2007.
Bayesian Tracking of Elongated Structures in 3D Images.
In: Karssemeijer, N., & Lelieveldt, B. (eds), Proceedings of Information Processing in Medical Imaging.

Simoncelli & Olshausen, 2001
Simoncelli, E. P., & Olshausen, B. A. 2001.
Natural Image Statistics and Neural Representation.
Annual Review of Neuroscience, 24, 1193-1216.

Steyvers et al., 2004
Steyvers, M., Smyth, P., Rosen-Zvi, M., & Griffiths, T. 2004.
Probabilistic Author-Topic Models for Information Discovery.
In: 10th ACM SigKDD Conference on Knowledge Discovery and Data Mining.

Sudderth et al., 2005
Sudderth, E. B., Torralba, A., Freeman, W. T., & Willsky, A. S. 2005.
Describing Visual Scenes using Transformed Dirichlet Processes.
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Swendsen & Wang, 1987
Swendsen, R. H., & Wang, J. S. 1987.
Nonuniversal Critical Dynamics in Monte Carlo Simulations.
Physical Review Letters, 58(2), 86-88.

Teh et al., 2005
Teh, Y. W., Jordan, M. I., Beal, M. J., & Blei, D. M. 2005.
Hierarchical Dirichlet Processes.
In: Advances in Neural Information Processing Systems (NIPS) 17.

Tierney, 1994
Tierney, L. 1994.
Markov Chains for Exploring Posterior Distributions.
The Annals of Statistics, 22(4), 1701-1728.

Torr & Davidson, 2003
Torr, Phil, & Davidson, C. 2003.
IMPSAC: Synthesis of Importance Sampling and Random Sample Consensus.
IEEE Transactions on Pattern Analysis and Machine Intelligence, 25(3), 354-364.

Torralba & Oliva, 2003
Torralba, Antonio, & Oliva, A. 2003.
Statistics of Natural Image Categories.
Network: Computation in Neural Systems, 14, 391-412.

Torre & Black, 2001
Torre, F., & Black, M. J. 2001.
Robust Principal Component Analysis for Computer Vision.
In: International Conference on Computer Vision.

Tu & Zhu, 2002
Tu, Z., & Zhu, S. C. 2002.
Image Segmentation by Data-Driven Markov Chain Monte Carlo.
IEEE Transactions on Pattern Analysis and Machine Intelligence, 24(5), 657-673.

Tu et al., 2005
Tu, Z., Chen, X. R., Yuille, A. L., & Zhu, S. C. 2005.
Image Parsing: Unifying Segmentation, Detection and Recognition.
International Journal of Computer Vision.

Wallach, 2004
Wallach, H. M. 2004.
Conditional Random Fields: An Introduction.
CIS MS-CIS-04-21. University of Pennsylvania.

Winkler, 2006
Winkler, G. 2006.
Image Analysis, Random Fields, and Markov Chain Monte Carlo Methods. 2nd edn.
Springer.

Wu et al., 2007
Wu, Y. N., Zhu, S. C., & Guo, C. E. 2007.
From Information Scaling of Natural Images to Regimes of Statistical Models.
Quarterly of Applied Mathematics.

Yedidia et al., 2000
Yedidia, J. S., Freeman, W. T., & Weiss, Y. 2000.
Generalized Belief Propagation.
Pages 689-695 of: Advances in Neural Information Processing Systems (NIPS), vol. 13.

Yedidia et al., 2001
Yedidia, J. S., Freeman, W. T., & Weiss, Y. 2001 (May).
Bethe free energy, Kikuchi approximations and belief propagation algorithms.
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Yedidia et al., 2005
Yedidia, J. S., Freeman, W. T., & Weiss, Y. 2005.
Constructing Free-Energy Approximations and Generalized Belief Propagation Algorithms.
IEEE Transactions on Information Theory, 51(7), 2282-2312.

Zabih & Kolmogorov, 2004
Zabih, Ramin, & Kolmogorov, Vladimir. 2004.
Spatially Coherent Clustering Using Graph Cuts.
Pages 437-444 of: IEEE Conference on Computer Vision and Pattern Recognition, vol. 2.

Zhang et al., 2001
Zhang, Y., Brady, M., & Smith, S. 2001.
Segmentation of Brain MR Images Through a Hidden Markov Random Field Model and the Expectation-Maximization Algorithm.
IEEE Transactions on Medical Imaging, 20(1), 45-57.

Zhu, 1999
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About this document ...

CSE 672 Bayesian Vision
University at Buffalo SUNY
Syllabus for Spring 2008
Last updated: 13 Jan 2008

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