ELaSTIC Similarity Graph Builder Version 1.82:2016-02-11
Copyright (c) 2012-2016 Jaroslaw Zola

Usage: elastic-sketch --input name --output name [options...]

Options:
  --input name       read input from files with this prefix
  --output name      write output to files with this prefix
  --config name      read configuration from this file
  --type {nt|aa}     set input sequence type (default nt)
  --sigma type       use this compressed amino acid alphabet (default A20)
  --compress {0|1}   use compressed alphabet during validation (default 0)
  --validate {0|1}   perform validation (default 1)
  --method type      use this method for validation (default 0)
  --kmer size        use kmers of this size (default 16)
  --gaps type        use these alignment parameters (default [1,-2,-10,-1])
  --level size       use this threshold during validation (default 75)
  --factor {0|1}     output intermediate values of similarity score (default 0)
  --modulo size      use this mod value in sketching (default 25)
  --iterate size     limit the number of sketching iterations to this (default 7)
  --cmax size        use this limit to mark frequent kmers (default 10000)
  --jmin size        use this limit to extract candidate pairs (default 50)
  --steal {0|1}      enable work stealing during validation (default 1)

