• R. Alomari, S. Ghosh, J. Koh, and V. Chaudhary, “Vertebral Column Localization, Labeling, and Segmentation”, in Computational Methods and Clinical Applications for Spine Imaging”, Springer, pp. 193-229. Spinal Imaging and Image Analysis, Lecture Notes in Computational Vision and Biomechanics Volume 18, 2015.
  
  
• T. Seth and V. Chaudhary, “Big Data in Finance”, in Big Data: Algorithms, Analytics, and Applications, Chapman and Hall/CRC Big Data Series, CRC Press, 2014.
  
  

2016

• Ruhan Sa, William Owens, Raymond Wiegand, and Vipin Chaudhary, “Fast scale-invariant lateral lumbar vertebrae detection andgmentation in X-ray images”, 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Orlando, FL, 17-20 August, 2016.
  
  
• S. Liu, H. Liu, V. Chaudhary, and D. Li, “An Infinite Mixture Model for Coreference Resolution in Clinical Notes”, Proceedings of 2016 AMIA (American Medical Informatics Association) Joint Summits on Clinical Research Informatics, March 23-24, 2016, San Francisco, USA.
  
  
• N. Khambekar, C. Spooner, and V. Chaudhary, “Analysis of Spectrum Sharing: Characterizing and Quantifying the Weaknesses of the Transmitter-signal Detection Based Approach to Dynamic Spectrum Access”, The Seventh International Conference on COMmunication Systems and NETworkS (COMSNETS), January 5-9, 2016, Bangalore, India (to appear).
  
  

2015

• Y. Wei and V. Chaudhary, “The Influence of Sample Reconstruction on Stock Trend Prediction via NARX Neural Network”, in IEEE 2015 International Conference on Machine Learning and Applications”, Dec 9-12, 2015, Miami, USA (to appear).
  
  
• N. Khambekar, V. Chaudhary, and C. Spooner, “Estimating the Use of Spectrum for Defining and Enforcing the Spectrum Access Rights”, IEEE International Conference on Military Communication (MILCOM), 2015, October 26-28, Tampa, Florida, USA, pp. 250-257.
  
  
• N. Khambekar, C. Spooner, and V. Chaudhary, “Quantified Discrete Spectrum Access (QDSA) Framework”, 43rd Research Conference on Communications”, Information and Internet Policy, Arlington, VA, USA, Sept 25-27, 2015.
  
  
• Y. Wei and V. Chaudhary, “Fast Quantitative Analysis of Stock Trading Points in Dual Period of DMAC”, IEEE International Conference on Big Data Computing Service and Applications, San Francisco, USA, Mar 30-Apr 2, 2015.
  
  
• S. Liu, R. Sa, O. Maguire, H. Minderman, and V. Chaudhary, “Spot counting on fluorescence in situ hybridization in suspension images using Gaussian mixture model”, SPIE Medical Imaging, Feb 21-26, 2015.
  
  
• C. Feng, A. J. Schultz, V. Chaudhary, and D. A. Kofke, “Eighth to sixteenth virial coefficients of the Lennard-Jones model”, in The Journal of Chemical Physics, 143, 044504, 2015 (9 pages), DOI: 10.1063/1.4927339
  
  

2014

• C. Feng, A. Schultz, V. Chaudhary, and D. Kofke, “Mixed-Precision Models for Calculation of High-Order Virial Coefficients on GPUs”, in IEEE International Conference on High Performance Computing (HiPC), December 17-20, 2014.
  
  
• S. Ghosh and V. Chaudhary, “Supervised Methods for Detection and Segmentation of Tissues in Clinical Lumbar MRI”, in Computerized Medical Imaging and Graphics, 2014, October, 38(7), pp. 639-649; DOI: 10.1016/j.compmedimag.2014.03.005
  
  
• J. Koh, V. Chaudhary, E. K. Jeon, and G. Dhillon, “Automatic Spinal Canal Detection in Lumbar MR Images in the Sagittal View Using Dynamic Programming”, in Computerized Medical Imaging and Graphics, 2014, October, 38(7), pp. 569-579.
  
  
• N. Khambekar, C. Spooner, and V. Chaudhary, “On Improving Serviceability with Quantified Dynamic Spectrum Access”, IEEE Dynamic Spectrum Access Networks (DySPAN), McLean, VA, USA, April 1-4, 2014.
  
  
• T. Seth, V. Chaudhary, C. Buyea, and L. Bone, “A Haptic Enabled Virtual Reality Framework for Orthopedic Surgical Training and Interventions”, International Journal of Computers and Their Applications (IJCA), Vol. 21, No. 4, 2014.
  
  
• R. Shivaswamy, A. Patra, and V. Chaudhary, “Integrating Data and Compute Intensive Workflows for Uncertainty Quantification in Large Scale Simulation – Application to Model Based Hazard Analysis”, International Journal of Computer Mathematics, Vol 91, Issue 4, 2014, pp. 730-747.
  
  

2013

• R. Shivaswamy, A. Patra, and V. Chaudhary, “Large Data and Computation in a Hazard Map Workflow Using Hadoop and Netezza Architectures”, International Workshop on Data-Intensive Scalable Computing Systems (DISCS-2013), in conjunction with 2013 ACM/IEEE Supercomputing Conference (SC'13), Nov 2013.
  
  
• Hazem Hiary, Raja S Alomari, and Vipin Chaudhary, “Segmentation and Localization of Whole Slide Images Using Unsupervised Learning”, Journal of IET Image Processing, July, 2013, 7(5), pp. 464-471.
  
  
• S. Al-Helo, R. Alomari, S. Ghosh, V. Chaudhary, G. Dhillon, M. B. Al-Zoubi, H. Hiary, and T. M. Hamtini, “Compression Fracture Diagnosis in Lumbar: A Clinical CAD System”, International Journal of Computer Assisted Radiology and Surgery, May 2013, Vol 8, Issue 3, pp. 461-469.
  
  
• S. Ghosh, M. R. Malgireddy, V. Chaudhary, and G. Dhillon, “A supervised approach towards segmentation of clinical MRI for automatic lumbar diagnosis”, MICCAI 2013 CSI Workshop.
  
  
• S. Ghosh, V. Chaudhary, and G. Dhillon, “Exploring the utility of axial MRI for diagnosis of lumbar disorders”", SPIE Medical Imaging 2013.
  
  
• S. Ghosh and V. Chaudhary, “Feature Analysis for Automatic Classiffication of HEp-2 Florescence Patterns:Computer-Aided Diagnosis of Auto-Immune Diseases”", ICPR 2012.
  
  
• V. Patil and V. Chaudhary, “Rack Aware Scheduling in HPC Data Centers: An Energy Conservation Strategy”, Cluster Computing, Vol. 16, Issue 3, Springer, 2013, pp. 559-573.
  
  
• R. Alomari, V. Chaudhary, J. Corso, and G. Dhillon, “Lumbar Spine Disc Herniation Diagnosis with a Joint Shape Model”, MICCAI 2013 Workshop on "Computational Methods and Clinical Applications for Spine Imaging", Nagoya, Japan, 2013.
  
  

2012

• Subarna Ghosh, Manavender R. Malgireddy, Vipin Chaudhary, and Gurmeet Dhillon. “A new approch to automatic disc localization in clinical lumbar MRI: Combining machine learning with heuristics”, ISBI, 2012.
  
  
• Raja' S. Alomari, Subarna Ghosh, Vipin Chaudhary, and Omar Al-Kadi. “Local binary patterns for stromal area removal in histology images”, SPIE Medical Imaging, 2012.
  
  
• Raja' S. Alomari, Heba Z. Al-Lahham, Vipin Chaudhary, and Hazem Hiary. “Automated proliferation rate estimation from Ki-67 histology images”, SPIE Medical Imaging, 2012.
  
  

2011

• Taruna Seth, Vipin Chaudhary, Cathy Buyea, and Lawrence Bone, “A Virtual Interactive Navigation System for Orthopaedic Surgical Interventions”, In Proc. of the 4th International Symposium on Applied Sciences in Biomedical and Communication Technologies, ISABEL'11, Oct. 26-29, Barcelona, Spain (Invited paper).
  
  
• Raja' S. Alomari, Vipin Chaudhary, and Gurmeet Dhillon, “Computer Aided Diagnosis System for Lumbar spine”, In Proc. of the 4th International Symposium on Applied Sciences in Biomedical and Communication Technologies, ISABEL'11, Oct. 26-29, Barcelona, Spain (Invited paper).
  
  
• Subarna Ghosh, Raja’ S. Alomari, Vipin Chaudhary, and Gurmeet Dhillon, “Composite Features for Automatic Diagnosis of Intervertebral Disc Herniation from Lumbar MRI”, In the Proc. Of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC, pp. 5068-5071, Aug. 30- Sept. 3 2011, Boston, MA, USA.
  
  
• Vikas A. Patil and Vipin Chaudhary, “Rack Aware Scheduling in HPC data centers”, HPPAC-IEEE International Parallel and Distributed Processing Symposium, Alaska, May 2011.
  
  
• Jaehan Koh, Peter Scott, Vipin Chaudhary, and Gurmeet Dhillon, “An Automated Segmentation Method of the Spinal Canal From Clinical MR Images Based on an Attention Model and an Active Contour Model”, IEEE 8th International Symposium on Biomedical Imaging (ISBI),March 30 – April 2, 2011.
  
  
• Subarna Ghosh, Raja’ S. Alomari, Vipin Chaudhary, and Gurmeet Dhillon, “Computer-Aided Diagnosis for Lumbar MRI using Heterogeneous Classifiers”, IEEE 8th International Symposium on Biomedical Imaging (ISBI),March 30 – April 2, 2011.
  
  
• Jaehan Koh, Raja' S. Alomari, Vipin Chaudhary, and Gurmeet Dhillon, “Lumbar Spinal Stenosis CAD from Clinical MRM and MRI Based on Inter- and Intra-Context Features with a Two-Level Classifier”, SPIE Medical Imaging 2011, February 12-17, 2011 (Podium Presentation).
  
  
• Subarna Ghosh, Raja’ S. Alomari, Vipin Chaudhary, and Gurmeet Dhillon, “Automatic lumbar vertebra segmentation from clinical CT for wedge compression fracture diagnosis”, SPIE Medical Imaging 2011, February 12-17, 2011 (Podium Presentation).
  
  
• Raja' S. Alomari, Jason J. Corso, and Vipin Chaudhary, “Labeling of Lumbar Discs Using both Pixel- and Object-Level Features with a Two-Level Probabilistic Model”, IEEE Transactions on Medical Imaging, vol. 30, no.1, pp.1-10, Jan. 2011.
  
  
• Raja' S. Alomari, Jason J. Corso, Vipin Chaudhary, and Gurmeet Dhillon, “Toward a clinical lumbar CAD: Herniation diagnosis”, International Journal of Computer Assisted Radiology and Surgery (IJCARS),Jan 2011(Epub Jun 2011).
  
  

2010

• V. Chaudhary, J. P. Walters, and H. Jiang, “Computation Checkpointing and Migration”, Nova Science Publishers, New York 2010.
  
  
• T. Scofield, J. Delmerico, V. Chaudhary, and G. Valente, “XtremeData dbX: An FPGA-Based Data Warehouse Appliance”, IEEE Computing in Science and Engineering, July/August 2010.
  
  
• X. Meng and V. Chaudhary, “A High-Performance Heterogeneous Computing Platform for Biological Sequence Analysis”, IEEE Transactions on Parallel and Distributed Systems, Sept. 2010, vol 21(9), pp 1267-1280.
  
  
• Jaehan Koh, Taehyong Kim, Vipin Chaudhary, and Gurmeet Dhillon, “Automatic Segmentation of the Spinal Cord and the Dural Sac in Lumbar MR Images Using Gradient Vector Flow Field”, 32nd International Conference on the IEEE Engineering in Medicine and Biology Society, EMBC, pp. 2117-2120, August 31-September 4, 2010.
  
  
• Jaehan Koh, Vipin Chaudhary, and Gurmeet Dhillon, “A Fully Automated Method of Associating Axial Slices with a Disc Based on Labeling of Multi-Protocol Lumbar MRI”, 2010 IEEE International Conference on Image Processing (ICIP), pp. 4341-4344, September 26-29, 2010.
  
  
• Jaehan Koh, Venu Govindaraju, and Vipin Chaudhary, “A Robust Iris Localization Method Using an Active Contour Model and Hough Transform”, 2010 IEEE International Conference on Pattern Recognition (ICPR), pp. 2852-2856, August 23-26, 2010.
  
  
• Raja'S. Alomari, Jason J. Corso, Vipin Chaudhary, and Gurmeet Dhillon, “Computer-aided diagnosis of lumbar disc pathology from clinical lower spine MRI”. International Journal of Computer Aided Radiology and Surgery, Vol.5, no 3, pp. 287-293, May 2010.
  
  
• Raja'S. Alomari, Jason J. Corso, Vipin Chaudhary, and Gurmeet Dhillon, “Lumbar disc erniation CAD with GVF-snake model ”. The international conference on Computer Assisted Radiology and Surgery (CARS'10), June, 2010, Geneva, Switzerland.
  
  
• Raja'S. Alomari, Jason J. Corso, Vipin Chaudhary, and Gurmeet Dhillon, “Automatic diagnosis of lumbar disc herniation using shape and appearance features from MRI”. In the proceedings of SPIE medical imaging, computer aided diagnosis (CAD),Vol.7624, 76241A , San Diego, CA, Feb, 2010.
  
  
• Jaehan Koh, Vipin Chaudhary, and Gurmeet Dhillon, “Diagnosis of Disc Herniation Based on Classifiers and Features Generated from Spine MR Images”, Proc. SPIE, Vol. 7624, 76243O, doi:10.1117/12.844386, February 13-18, 2010.
  
  
• J. P. Walters, V. Chaudhary, and B. Schmidt, “Database Searching with Profile Hidden Markov Models on Reconfigurable and Many-Core Architectures”, in Bioinformatics, High Performance Parallel Computer Architectures, Taylor and Francis/CRC Press, 2010, pp 203–222.
  
  

2009

• J. Delmerico, N. Byrnes, A. Bruno, M. Jones, S. Gallo, and V. Chaudhary, “ Comparing the performance of Clusters, Hadoop, and Active Disks on Microarray Correlation Computations ”, 16th International Conference on High Performance Computing, HiPC 2009, Dec. 16-19, 2009, Kochi, India,.
   
• N. Mehta, Raja S. Alomari, V. Chaudhary “ Content based Sub-Image Retrieval System for High Resolution Pathology Images using Salient Interest Points ”, In the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society EMBS.  Sept. 2 - 6, 2009, Minneapolis, Minnesota, USA.
   
• J. P. Walters and V. Chaudhary, “ A Fault-tolerant Strategy for Virtualized HPC Clusters ”, The Journal of Supercomputing, Vol 50(3), Dec 2009.
   
• Raja S. Alomari, Jason J. Corso, Vipin Chaudhary, and Gurmeet Dhillon,“ Desiccation Diagnosis In Lumbar Discs From Clinical MRI with a Probabilistic Model. ”, In the proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI’09), pp. 546-549, June 28 - July 1, 2009, Boston, MA, USA.
  
  
• X.Meng and V. Chaudhary,“ Boosting Data Throughput for Sequence Database Similarity Searches on FPGAs using an Adaptive Buffering Scheme ”,Journal of Parallel Computing,Vol.35, No. 1, January 2009, pp. 1-11.
   
• J. P. Walters and V. Chaudhary,“ Replication-Based Fault-Tolerance For MPI Applications ”,IEEE Transactions on Parallel and Distributed Systems, June 2009.
   
• Raja S. Alomari, Jason J. Corso, V. Chaudhary, and G. Dhillon,“ Abnormality detection in lumbar discs from clinical MR images with a probabilistic model,” Computer Assisted Radiology and Surgery – 23rd International Congress and Exhibition, June 23-27, 2009, Berlin, Germany. (Podium Presentation).
   
• J. P. Walters, R. Darole, and V. Chaudhary, “ Improving MPI-HMMER’s Scalability with Parallel I/O ”, IEEE/ACM International Parallel and Distributed Processing Symposium (IPDPS), May 25-29, 2009, Rome, Italy.
   
• J. P. Walters, V. Balu, S. Kompalli, and V. Chaudhary, “ Evaluating the use of GPUs in Liver Image Segmentation and HMMER Database Searches”, IEEE/ACM International Parallel and Distributed Processing Symposium (IPDPS), May 25-29, 2009, Rome, Italy.
   
• N. Khambekar, C. Spooner, and V. Chaudhary, “ Listen-while-Talking: A Technique for Primary User Protection ”, IEEE Wireless Communications and Networking Conference, April 5-8, 2009, Budapest, Hungary.
   
• Raja S. Alomari, R. Allen, B. Sabata, and V. Chaudhary, “ Localization of tissues in high resolution digital anatomic pathology images ”, SPIE Medical Imaging 2009, Feb 10-12, 2009, Florida (Podium Presentation).
   
• C. Bhole, S. Kompalli, and V. Chaudhary, “ Context-sensitive labeling of spinal structures in MRI images ”, SPIE Medical Imaging 2009, Feb 10-12, 2009, Florida.
  
  
• X. Meng and V. Chaudhary,“ Heterogeneous Computing for Biological Sequence Database Searches ”, 7th Asia-Pacific Bioinformatics Conference (APBC2009), Beijing, China, January 13-16, 2009.
  
  

2008

• J. Eizenkop, I. Avrutsky, D. G. Georgiev, and V. Chaudhary, “ Single-pulse excimer laser nanostructuring of silicon: A heat transfer problem and surface morphology” ,Journal of Applied Physics (Vol.103, Issue 9), 2008.
   
• Jason J. Corso, Raja S. Alomari, and Vipin Chaudhary ,“ Lumbar disc localization and labeling with a probabilistic model on both pixel and object features”, in Proceedings of Medical Image Computing and Computer Aided Intervention (MICCAI), volume LNCS 5241 Part 1, pages 202-210, New York City, USA, Sept, 2008.
  
  
• J. P. Walters, B. Bantwal, and V. Chaudhary, “ Enabling Interactive Jobs in Virtualized Data Centers”, First International Workshop on Cloud Computing and Its Applications, Chicago, IL, October 22-23, 2008.
  
  
• Raja S. Alomari, Vipin Chaudhary, Jason J. Corso. “ A Two-Level Probabilistic Model for Lumbar Anatomy Detection ”,In the Proceedings of the 21st CSE Conference 2008, University at Buffalo, Buffalo, NY, March, 2008.
  
• Raja S. Alomari, Suryaprakash Kompalli, Vipin Chaudhary. “ Segmentation of the Liver from Abdominal CT Using Markov Random Field Model and GVF Snakes”, In the proceedings of the International Conference on Complex, Intelligent and Software Intensive Systems (CISIS'08), pp. 293-298, Barcelona, Spain, March, 2008.
  
  
• Suryaprakash Kompalli, Mohammed Alam, Raja S. Alomari, Stanley T Lau, Vipin Chaudhary.“ Design of a Benchmark Dataset, Similarity Metrics, and Tools for Liver Segmentation ”,In the Proceedings of the SPIE Conference on Medical Imaging, 2008. San Diego, California, Feb 16-21, 2008.
  
  
• H. Lufei, W. Shi, and V. Chaudhary, Adaptive Secure Access to Remoter Services in Mobile Environments ”,IEEE Transactions on Services Computing, January 2008, Vol. 1, No. 1, pp. 49-61.
  

2007

• J. Walters, X. Meng, V. Chaudhary, T. Oliver, L. Y. Yeow, B. Schmidt, D. Nathan, J. Landman, “A Hardware/Software-Accelerated MPI-HMMER Solution”, Special Issue on Computing Architectures and Acceleration for Bioinformatics Algorithms, The Journal of VLSI Signal Processing Systems for Signal, Image, and Video Technology (Elsevier), 48(3), pp. 223-238, 2007.
  
  
• N. Garg, D. Grosu, and V. Chaudhary, “An Antisocial Strategy for Scheduling Mechanisms”, IEEE Transactions on Systems, Man, and Cybernetics – Part A, Vol. 37, No. 6, November 2007, pp. 946-954.
  
  
• J. Eizenkop, D.G. Georgiev, I. Avrutsky, G. Auner, V. Chaudhary, “Investigation of the formation of nanostructures on silicon thin films after excimer laser irradiation”, Journal of Physics: Conference Series 59 (2007), pp 458—461.
  
  
• J. Eizenkop, I. Avrutsky, G. Auner, D.G. Georgiev, and V. Chaudhary, “Single pulse excimer laser nanostructuring of thin silicon films: Nanosharp cones formation and a heat transfer problem”, Journal of Applied Physics, 101, (2007), pp. 094301—094307.
  
  
• J. Hu, X. Jin, J. B. Lee, L. Zhang, V. Chaudhary, M. Guthikonda, K. H. Yang, and A. I. King, “Intraoperative Brain Shift Prediction Using a 3D Inhomogeneous Patient-Specific Finite Element Model”, Journal of Neurosurgery, Vol. 106, No. 1, January 2007, pp. 164—169. 
  
  
• Raja S Alomari, Suryaprakash Kompalli, and Vipin Chaudhury, “Liver Segmentation from Abdominal CT images using GVF snake”, In the proceedings of the 2007 WNYIP workshop, pp. 7 - 10, RIT, Rochester, Sept 2007.
  
  
• J. P. Walters, J. Landman, and V. Chaudhary, “Optimized Cluster-Enabled HMMER Searches”, in Grid Computing for Bioinformatics and Computational Biology, Editors: El-Ghazali Talbi and Albert  Zomaya, John Wiley and Sons, 2007, pp. 51-60.
  
  
• J. P. Walters, Z. Liang, W. Shi, and V. Chaudhary, “Wireless Sensor Network Security: A Survey”, in Security in Distributed, Grid, and Pervasive Computing, Editor: Yang Xiao, Auerbach Publications, CRC Press, 2007, ISBN: 0849379210 (to appear).
  
  

2006

• X. Meng and V. Chaudhary, “Simulation Hybrid Parallelism for Sequence Alignment on Linux Clusters”, in International Journal of Bioinformatics Research and Applications (IJBRA), Volume 2, Issue 4, pp. 430—441, 2006.
  
  
• Gulsheen Kaur, Jun Tan, Mohammed Alam, Vipin Chaudhary, Dingguo Chen, Ming Dong, Hazem Eltahawy, Farshad Fotouhi, Christopher Gammage, Jason Gong, William Grosky, Murali Guthikonda, Jingwen Hu, Devkanak Jeyaraj, Xin Jin, Albert King, Joseph Landman, Jong Lee, Qing Hang Li, Hanping Lufei, Michael Morse, Jignesh Patel, Ishwar Sethi, Weisong Shi, King Yang, and Zhiming Zhang, “CASMIL: A comprehensive software/toolkit for Image-guided Neurosurgeries”, International Journal of Medical Robotics and Computer Assisted Surgery, John Wiley & Sons Ltd., Vol. 2, No.2, June 2006, pp. 118—130
  
  
• D. Thaker and V. Chaudhary, “Simulation Tools to Study a Distributed Shared Memory for Clusters of Symmetric Multiprocessors”, Future Generation Computer Systems The International Journal of Grid Computing: Theory, Methods, and Applications, Elsevier, Volume 22, Issues 1-2, January 2006, pp. 57-66.
  
  
• H. Liu, H. Lufei, W. Shi, and V. Chaudhary, “Towards Ubiquitous Access of Computer-Assisted Surgery Systems”, in Proceedings of 28th Annual International Conference of IEEE Engineering in Medicine and Biology Society (EMBS), August 30-September 3, 2006, New York City, USA.
  
  
• J. Ma, Q. Zhao, V. Chaudhary, J. Cheng, L. T. Yang, R. Huang, and Q. Jin, “Ubisafe Computing: Vision and Challenges” (I), in in 3rd International Conference on Autonomic and Trusted Computing (ATC-06), September 3-6, 2006 , Wuhan and Three Gorges, China.
  
  
• M. Nanjundaiah and V. Chaudhary, “A simulation study comparing the performance of two RFID protocols”, in 3rd International Conference on Ubiquitous Intelligence and Computing (UIC-06), September 3-6, 2006, Wuhan and Three Gorges, China.
  
  
• J. Tan, D. Chen, V. Chaudhary, and I. Sethi , “A Template Based Technique For Automatic Detection Of Fiducial Markers In 3D Brain Images”, in CARS 2006 (Computer Assisted Radiology and Surgery, 20th International Congress and Exhibition), June 28 - July 1, 2006, Osaka , Japan .
  
  
• H. Lufei, W. Shi , and V. Chaudhary, “M-CASEngine: a collaborative environment for computer-assisted surgery”, in CARS 2006 (Computer Assisted Radiology and Surgery, 20th International Congress and Exhibition), June 28 - July 1, 2006, Osaka, Japan.
  
  
• D. Chen, V. Chaudhary, and I. Sethi, “Automatic fiducial localization in brain images”, in CARS 2006 (Computer Assisted Radiology and Surgery, 20th International Congress and Exhibition), June 28 - July 1, 2006, Osaka , Japan.
  
  
• D. Chen, V. Chaudhary, and I. Sethi, “3D digital brain atlas construction using Talairach & Tournoux 88”, in CARS 2006 (Computer Assisted Radiology and Surgery, 20th International Congress and Exhibition), June 28 - July 1, 2006, Osaka , Japan .
  
  
• J. P. Walters, B. Qudah, and V. Chaudhary, “Accelerating the HMMER Sequence Analysis Suite using Conventional Processors”, IEEE 20th International Conference on Advanced Information Networking and Applications, April 18-20, 2006, Vienna , Austria .
  
  
• J. P. Walters, H. Jiang, and V. Chaudhary, “An Adaptive Heterogeneous Software DSM”, in 5th International Workshop on Compile and Runtime Techniques for Parallel Computing (CRTPC 2006) with 2006 International Conference on Parallel Processing, August 14-18, 2006, Columbus, Ohio, pp. 265 – 272.
  
  
• C. Gammage and V. Chaudhary, “On Optimization and Parallelization of Fuzzy Connected Segmentation for Medical Imaging”, 2nd IEEE International Workshop on High Performance Computing in Medicine and Biology (HiPCoMB 2006), held with IEEE 20th International Conference on Advanced Information Networking and Applications, April 18-20, 2006, Vienna, Austria, pp. 623 – 627.
  
  
• V. Chaudhary and H. Jiang, “Techniques for Migrating Computations on the Grid”, in Engineering the Grid: Status and Perspective, Editors: Beniamino Di Martino, Jack Dongarra, Adolfy Hoisie, Hans Zima, and Laurence T. Yang, American Scientific Publishers, pp. 399 – 415, January 2006, ISBN: 1-58883-038-1.
  
  
• H. Jiang, V. Chaudhary, and J. P. Walters, “Data Conversion for Heterogeneous Migration/Checkpointing”, in High Performance Computing: Paradigm and Infrastructure, Editors: Laurence T. Yang and Minyi Guo, John Wiley and Sons, N.J., pp. 241 – 260, 2006, ISBN: 13-978-0-471-65471-1.
  
  
• F. Liu and V. Chaudhary, “OpenMP for Heterogeneous Chip Multiprocessors”, in High Performance Computing: Paradigm and Infrastructure, Editors: Laurence T. Yang and Minyi Guo, John Wiley and Sons, N.J., pp. 117 – 134, 2006, ISBN: 13-978-0-471-65471-1.
  
  
• V. Chaudhary, F. Liu, X. Meng, V. Matta, A. Nambiar, G. Yadav, and L. T. Yang, “Parallel Implementations of Local Sequence Alignment: Hardware and Software”, in Parallel Computing in Bioinformatics and Computational Biology, Editor: Albert Zomaya, John Wiley and Sons, 2006
  
  

2005

• A. Nambiar and V. Chaudhary, “On Tools for Modeling High-Performance Embedded Systems”, in Proc. of Intl. Conf. on Embedded and Ubiquitous Computing, Dec 2005, Nagasaki , Japan
   
• J. Hu, X. Jin, J. B. Lee, L. Zhang, V. Chaudhary, K. H. Yang, and A. I. King, “A 3D Patient-Specific Finite Element Model For Predicting Brain Shift During Neurosurgery”, Proceedings of the 2005 BMES Annual Fall Meetings, Baltimore, MD, Sept. 28 – Oct. 1, 2005
   
• A. Nambiar and V. Chaudhary, “Mapping Resource Constrained Applications on Chip Multiprocessors”, International Conference on Embedded Systems and Applications, Las Vegas , NV , June 2005, pp. 117-123.
   
• Y. Ji, H. Jiang, and V. Chaudhary, “Adaptation Strategies for Application-Level Computation Migration/Checkpointing”, International Conference of Parallel and Distributed Processing Techniques and Applications, Las Vegas, NV, June 2005, pp. 1156-1162.
   
• Y. Ji, H. Jiang, and V. Chaudhary, “Adaptation Point Analysis for Computation Migration/Checkpointing”, in ACM Symposium on Applied Computing, March 2005, Santa Fe, New Mexico, pp. 750-751.
   
• V. Chaudhary and H. Jiang, “Migrating Processes/Threads in Grids”, International Conference and Exposition on Communications and Computing, 28(3), IIT Kanpur , India , February 4-6, 2005 .
   
• G. Yadav, R. K. Singh, V. Chaudhary, “Software-only Multiple Variable Length Decoding for Real-Time Video on MDSP”, Proc. of IEEE International Conference on Consumer Electronics, Jan 2005, Las Vegas .
  
  
• V.Chaudhary, C. Gammage, and J. Landman, “ Opportunities for Parallel/Distributed Computing in Surgery”, 13th DPS Workshop, Okinawa , Japan , November 2005, pp. 240-244.
   
• X. Meng and V. Chaudhary, “Exploiting Multi-level Parallelism for Homology Search using General Purpose Processors”, Proceedings of the 1st IEEE International Workshop on High Performance Computing for Medicine and Biology, with 11th International Conference on Parallel and Distributed Systems (ICPADS 2005), 20-22 July 2005 in Fukuoka, Japan, pp. 331-335.
   
• N. Garg, D. Grosu, and V. Chaudhary, “An Antisocial Strategy for Scheduling Mechanisms”, Proc. of the 19th IEEE International Parallel and Distributed Processing Symposium, 7th Workshop on Advances in Parallel and Distributed Computational Models (APDCM'05), April 4-8, 2005, Denver, Colorado, USA.
   
• M. Nanjundaiah and V. Chaudhary, “Improvement to the Anticollision Protocol Specification for 900 MHz Class 0 Radio Frequency Identification Tag”, in International Workshop on Ubiquitous Smart Worlds, held in conjunction with IEEE Conference on Advanced Information Networking and Applications, March 2005, Taipei, Taiwan, pp. 616-620.
  
  
• V. Chaudhary, “ Heterogeneous Checkpointing of HPC Applications ”, in SIAM Conference on Mathematics for Industry: Challenges and Frontiers, Oct, 2005, Detroit, MI.
  
  
• J. Eizenkop, D.G. Georgiev, I. Avrutsky, G. Auner, and V. Chaudhary, “ Investigation of the formation of nanostructures on silicon thin films after excimer laser irradiation”, 8th International Conference on Laser Ablation, September 11-16, 2005, Banff, Alberta, Canada, Printed in Journal of Physics, Conference Series.
   
  
• Lee, J., Hu, J., Zhang, L., Yang, K. and King, A, “ Development of a Three-Dimensional Finite Element Model of the Human Brain to Investigate Gravity-Induced Brain Deformation”, BMDE 2005.
   
  
• Michael M, Patel J., Grosky W., Zamorano W, “ Hitting the Bulls-eye with the Target Tree ”, Journal of Biomechanical Engineering, 2005.

2004

• V. Chaudhary, W. L. Hase, H. Jiang, L. Sun, and D. Thaker, “Experiments with Parallelizing Tribology Simulations,” Journal of Supercomputing – special issue on High Performance Scientific and Engineering Applications, Vol. 28, pp. 323—343, 2004.
  
  
• G. Yadav, R. K. Singh, V. Chaudhary, “ MAVD: MPEG-2 Audio Video Decode System on MDSP”, in Proc. of IEEE Intl. Symposium on Consumer Electronics, pg. 19-24, Sept 2004, Reading , UK .
   
• G. Yadav, R. K. Singh, V. Chaudhary, “ On Implementation of MPEG-2 like Real-Time Parallel Media Applications on MDSP SoC Cradle Architecture”, in Proc. of Intl. Conf. on Embedded and Ubiquitous Computing, pg. 281-290, Aug 2004, Aizu, Japan
   
• X. Meng and V. Chaudhary, “Bio-Sequence Analysis with Cradle's 3SoC Software Scalable System on Chip”, Proceedings of the 19th ACM Symposium on Applied Computing, Cyprus, March 2004, pp. 202—206.
   
• H. Jiang and V. Chaudhary, “Process/Thread Migration and Checkpointing in Heterogeneous Distributed Systems”, in Proceedings of the 37th Hawaii International Conference on System Sciences (HiCSS-37), IEEE Computer Society, Big Island, Hawaii, January 5-8, 2004.
  
  
• V. Chaudhary, W. L. Hase, H. Jiang, L. Sun, and D. Thaker, “Comparing various parallelizing approaches for tribology simulations”, in Hardware/Software Support for Parallel and Distributed Scientific and Engineering Computing, Editors: L. T. Yang and Y. Pan, Kluwer Academic Publishers, 2004, pp. 231—252.
  
  

2003

• H. Jiang and V. Chaudhary, “Thread Migration/Checkpointing for Type-Unsafe C Programs”, Proceedings of ACM/IEEE International Conference on High Performance Computing (HiPC), Hyderabad, India, December 2003, pp. 469—479.
   
• H. Jiang, V. Chaudhary, and J. P. Walters, “Data Conversion for Process/Thread Migration and Checkpointing”, Proceedings of the International Conference on Parallel Processing (ICPP), Kaohsiung, Taiwan, October 6-9, 2003, pp. 473 – 480.
   
• Darshan Thaker, Vipin Chaudhary, “DSMSim: A Distributed Shared Memory Simulator for Clusters of Symmetric Multi-Processors”. PDPTA 2003: 1561-1567
   
• F. Liu and V. Chaudhary, “Extending OpenMP for Heterogeneous Chip Multiprocessors”, Proceedings of the International Conference on Parallel Processing, Kaohsiung , Taiwan , October 2003, pp. 161 – 168.
  
  
• F. Liu and V. Chaudhary, “A Practical OpenMP Compiler for System on Chips”, Proceedings of International Workshop on OpenMP Applications and Tools, June 2003, pp. 54 – 68.

2002

• N. Ghate and V. Chaudhary, “ Optimizing Automatically Generated Programs for a Software Distributed Shared Memory System”, International Conference on Parallel and Distributed Computing and Systems, November 2002, pp. 735-744.
   
• H. Jiang and V. Chaudhary, “On Improving Thread Migration: Safety & Performance”, ACM/IEEE International Conference on High Performance Computing, December 2002, pp. 474—484.
   
• M. Shah, V. Chaudhary, and G. Edjlali, “Policy Based User Configurable Java Security Architecture”, International Conference on Security and Management, June 2002, pp. 376—382.
   
• H. Jiang and V. Chaudhary, “Compile/Run time support for Thread Migration”, ACM/IEEE International Parallel and Distributed Processing Symposium, April 2002, pp. 58--66.
  
  
• L. Zhang and V. Chaudhary, “On the performance of Bus Interconnection for SOCs”, ACM 4th Workshop on Media and Stream Processors, Nov. 2002, pp. 1 – 9.
   
• H. Jiang and V. Chaudhary, “MigThread: Thread Migration in DSM Systems”, Workshop on Compile/Runtime Techniques for Parallel Computing, held with International Conference on Parallel Processing, August 2002, pp. 581—588.
   
• V. Chaudhary, W. L. Hase, H. Jiang, L. Sun, and D. Thaker, “Experiments with Parallelizing a Tribology application”, Workshop on High Performance Scientific and Engineering Computing with Applications, held with International Conference on Parallel Processing, August 2002, 344—351.
  

2001

• C. Xu and V. Chaudhary, “Time Stamp Algorithms for Runtime Parallelization of DOACROSS Loops with Dynamic Dependences”, IEEE Transactions on Parallel and Distributed Systems, May 2001, Vol. 12, No. 5, pp. 433 – 450
  

2000

• S. Roy, R. Jin, V. Chaudhary, and W. Hase, “Parallel Molecular Dynamics Simulations of Adhesive Interactions of Alkanes/Hydroxylated a-Aluminum Oxide Interfaces”, Computer Physics Communications, pp. 210-218, 128(2000), June 2000.

1999

• S. Roy and V. Chaudhary, “Design Issues for a High-Performance Distributed Shared Memory on Symmetrical Multiprocessor Clusters”, Cluster Computing: The Journal of Networks, Software Tools and Applications, pp. 177 - 186, 2 (1999) 3 1999.
   
• J. Ju and V. Chaudhary, “A Fission Technique Enabling Parallelization of Non-Perfectly Nested Loops”, ACM/IEEE International Conference on High Performance Computing, Dec. 99, pp. 87—94.
   
• D. Reimann, V. Chaudhary, and I. K. Sethi, “Modeling Cone-Beam Tomographic Reconstruction Using LogSMP: An Extended LogP Model for Cluster of SMPs”, ACM/IEEE International Conference on High Performance Computing, Dec. 99, pp. 77—83.
   
• V. Chaudhary, C. Xu, S. Roy, S. Jia, G. Ezzell, and C. Kota, “Parallelization of Radiation Therapy Treatment Planning (RTTP): A Case Study”, International Conference on Parallel and Distributed Computing Systems, 1999, pp. 534 – 539.
   
• S. Roy, V. Chaudhary, S. Jia , and P. Menon, “Application Based Evaluation of Distributed Shared Memory Versus Message Passing”, International Conference on Parallel and Distributed Computing Systems, 1999, pp. 15 – 20.
   
• V. Chaudhary, G. Edjlali, S. Roy, and D. Thaker, “Cost-Performance Evaluation of SMP Clusters”, International Conference on Parallel and Distributed Processing Techniques and Applications, 1999, pp. 718 – 724.
   
• S. Roy and V. Chaudhary, “Evaluation of Cluster Interconnects for a Distributed Shared Memory”, Proc. of the IEEE International Performance, Computing, and Communication Conference, 1999, pp. 1—7.
   
• S. Roy and V. Chaudhary, “Communication Requirements of Software Distributed Shared Memory Systems”, Proc. of IEEE National Conference on Communications, 1999, pp. 409—416.
   
• G. Edjlali, A. Acharya, and V. Chaudhary, “History-Based Access Control for Mobile Code”, in Secure Internet Programming, Eds. Jan Vitek and Christian Jensen, Springer-Verlag, 1999, pp. 413 — 432.
  
  

1998

• V. Chaudhary and J. K. Aggarwal, “Parallel Image Component Labeling for Target Acquisition”, in Journal of Optical Engineering – special issue on Target Acquisition, July 1998, Vol. 37, No. 7, pp. 2078—2090.
  
  
• S. Roy and V. Chaudhary, “Strings: A High-Performance Distributed Shared Memory for Symmetrical Multiprocessor Clusters”, Proc. of IEEE Conf. on High Performance Distributed Computing, July 1998, pp. 90 – 97.
   
• G. Edjlali, A. Acharya, and V. Chaudhary, “History-Based Access Control for Mobile Code”, ACM Conference on Computer and Communication Security, November 1998, pp. 38—48.
   
• P. Menon, V. Chaudhary, and J. Pipe, “ Parallel Algorithms for Deblurring of MR Images”, International Conference on Computers and Their Applications, March 1998, pp. 266—269.
  

1997

• J. Ju and V. Chaudhary, “Unique Sets Oriented Parallelization of Loops with Non-uniform Dependences”, in The Computer Journal - Special issue on Automatic Loop Parallelization, Vol. 40, No. 6, 1997, pp. 322—339.
   
• S. Punyamurtula, V. Chaudhary, J. Ju, and S. Roy, “Compile Time Partitioning of Nested Loop Iteration Spaces with Non-Uniform Dependences”, in Journal of Parallel Algorithms and Applications -- Special issue on Optimizing Compilers for Parallel Languages, Vol. 12, 1997, pp. 113 -- 141.
  
• V. Chaudhary and M. Ahluwalia, “ PEST : A system for evaluating parameters in a load balancing system”, International Conference on Distributed Processing and Networking, December 1997, pp. 48-52.
   
• V. Chaudhary, C. Xu, J. Shi, D. Hu, G. Ezzell, and C. Kota, “ Experiences on the parallelization of radiation therapy treatment planning”, International Conference on Advanced Computing, December 1997, pp. 135-141.
   
• C. Xu and V. Chaudhary, “Time-stamping algorithms for parallelization of loops at run-time”, in Proceedings of the ACM/IEEE International Parallel Processing Symposium, April 1997, (8 pages).
   
• S. Roy and V. Chaudhary, “A New Metric for Processor Allocation Schemes in Multiprocessor Systems”, in Proceedings of the IEEE International Performance, Computing, and Communications Conference, Feb. 1997, pp. 42--48.
   
• S. Roy and V. Chaudhary, “Parallelization of 3-D Range Image Segmentation on a SIMD Multiprocessor”, in Proceedings of the International Conference on Computers and Their Applications, Mar. 1997, pp. 106--109.

1996

• D. Reimann, M. J. Flynn, V. Chaudhary, and I. K. Sethi, “Parallel Computing Methods for X-Ray Cone Beam Tomography with Large Array Sizes ”, in Proceedings of the IEEE Nuclear Science Symposium and Medical Imaging Conference Record, November 1996, pp. 1710--1713.
   
• D. Reimann, V. Chaudhary, M. J. Flynn, I. K. Sethi, “Cone Beam Tomography using MPI on Heterogeneous Workstation Cluster”, in Proceedings of the Second MPI Developers Conference, 1996, pp. 142--148.
   
• J. Ju and V. Chaudhary, “Unique Sets Oriented Partitioning of Nested Loops with Non-Uniform Dependences”, in Proceedings of the International Conference on Parallel Processing, 1996, Vol III, pp. 45--52
   
• D. Reimann, V. Chaudhary, M. J. Flynn, I. K. Sethi, “Parallel Implementation of Cone Beam Tomography”, in Proceedings of the International Conference on Parallel Processing, 1996, Vol. II, pp. 170--173.
   
• A. Alrabady, S. M. Mahmud, and V. Chaudhary, “Placement of Resources in the Star Network”, in Proceedings of the IEEE International Conference On Algorithms and Architectures for Parallel Processing, 1996.
   
• V. Chaudhary, C. Z. Xu, S. Roy, J. Ju, V. Sinha, and L. Luo, “Design and evaluation of an environment APE for Automatic parallelization of Programs”, in Proceedings of the IEEE International Symposium on Parallel Architectures, Algorithms, and Networks, June 1996, 77--83.
  
  
• V. Chaudhary, J. Ju, L. Luo, S. Roy, V. Sinha, C. Xu, and V. Konda, “Automatic parallelization of non-uniform dependences”, in Proceedings of the First SUIF Compiler Workshop, 1996, pp. 148--152.

1995

• G. Dommety, V.Chaudhary, and B. Sabata, “Strategies for Processor allocation in k-ary n-cubes”, in Proceedings of the International Conference on Parallel and Distributed Computing Systems, 1995, pp. 216--221.
  
  
• C. Vinod and V. Chaudhary, “ A case study of parallel hierarchical radiosity algorithms on a DM-COMA architecture”, in Proceedings of the International Conference on Parallel and Distributed Computing Systems, 1995, pp. 236--241.
   
• S. P. Rana, K. Raman, and V. Chaudhary, “ Migrating controller based framework for mutual exclusion in distributed systems”, in Proceedings of the IEEE International Performance, Computers, and Communications Conference, 1995, pp. 1--7.
  

1994

• V. Chaudhary, K. Kumari, P. Arunachalam, and J. K. Aggarwal, “Manipulation of Octrees and Quadtrees on Multiprocessors”, in International Journal on Pattern Recognition and Artificial Intelligence, Vol. 8, No. 2, April '94, pp. 439—456.
   
  
• R. Srinivasan, V. Chaudhary, and S. M. Mahmud, “Contention sensitive fault-tolerant routing algorithms for hypercubes”, in Proceedings of the IEEE International Symposium on Parallel Architectures, Algorithms, and Networks, 1994, pp. 197--204.
   
• S. Punyamurtula and V. Chaudhary,  “ Minimum dependence distance tiling of nested loops with non-uniform dependences”, in Proceedings of the IEEE Symposium on Parallel and Distributed Processing, 1994, pp. 74--81.
   
• S. Ponnuswamy and V. Chaudhary,  “Embedding Hamiltonians and cycles in rotator and cycle prefix digraphs” in Proceedings of the IEEE Symposium on Parallel and Distributed Processing, 1994, pp. 603--610.
   
• T. Samaratunga, R. Srinivasan, V. Chaudhary, and S. M. Mahmud,  “An optimal mapping algorithm for HIN-Based multiprocessor systems”, in Proceedings of the International Conference on Parallel and Distributed Computing Systems, 1994, pp. 706--711.
   
• S. Ponnuswamy and V. Chaudhary,  “Analysis of fault tolerance in Cayley digraphs using forbidden faulty sets” in Proceedings of the International Conference on Parallel and Distributed Computing and Systems, 1994, pp. 346--349.
   
• S. Ponnuswamy and V. Chaudhary,  “A comparative study of star graphs and rotator graphs” in Proceedings of the International Conference on Parallel Processing, 1994, Vol. I, pp. 46-50.
  
  
• V. Chaudhary, K. Kumari, P. Arunachalam, and J. K. Aggarwal, “Manipulation of Octrees and Quadtrees on Multiprocessors”, in Parallel Image Analysis and Processing, (Editors: K. Inoue, A. Nakamura, M. Nivat, A. Saoudi, and P. S. P. Wang), World Scientific Publishing Company, 1994, pp. 25 – 41. (Extended version of a journal paper)
  
  

1993

• V. Chaudhary and J. K. Aggarwal, “A generalized scheme for mapping parallel algorithms”, in IEEE Transactions on Parallel and Distributed Systems, Mar '93, pp. 328 – 346.
  
  
• V. Gautam and V. Chaudhary, “Subcube allocation strategies in a k-ary n-cube”, in Proceedings of the International Conference on Parallel and Distributed Computing Systems, pp. 141--146, 1993.
   
• V. Chaudhary, “Mapping algorithms for permutation networks”, in Proceedings of the IEEE Midwest Conference on Circuits and Systems, August 93, pp. 323—326.
   
• S. Ponnuswamy and V. Chaudhary, “Embedding of meshes on rotator graphs”, in Proceedings of the IEEE Midwest Conference on Circuits and Systems, August 93, pp. 5--8.
   
• N. Ramesh and V. Chaudhary, “Complexity analysis of range image segmentation on MasPar MP-1” , in Proceedings of the IEEE Midwest Conference on Circuits and Systems, August 93, pp. 903--906.
   
• V. Chaudhary, B. Sabata, and J. K. Aggarwal, “Mapping interconnection networks into VEDIC networks”, in Proceedings of the IEEE/ACM International Parallel Processing Symposium, 1993, pp. 531--537

1992

• V. Chaudhary, K. Kumari, P. Arunachalam, and J. K. Aggarwal, “Parallel manipulations of octrees and quadtrees”, in Proceedings of Second International Conference on Parallel Image Analysis, Ube, Japan, Lecture Notes in Computer Science, pp. 69--86, Springer Verlag, 1992.
   
• V. Chaudhary, B. Sabata, and J. K. Aggarwal, “ Deadlock-free multicast wormhole routing in VEDIC networks”, poster at International Conference on Parallel Processing, 92.
   
• V. Chaudhary and J. K. Aggarwal, “On the complexity of parallel image component labeling”, in Proceedings of the International Conference on Parallel Processing, August 1991, Vol. III, pp. 183 -- 187.
  

1991

• V. Chaudhary, B. Sabata, and J. K. Aggarwal, “The VEDIC network for multicomputers”, in Proceedings of the International Conference on Parallel Processing, August 1991, Vol. I, pp. 686 -- 687.
  

1990

• V. Chaudhary and J. K. Aggarwal, “Generalized mapping of parallel algorithms onto parallel Architectures”, in Proceedings of the International Conference on Parallel Processing, August 1990, Vol. II, pp. 137 -- 141.
  
  
• V. Chaudhary and J. K. Aggarwal, “Parallelism in computer vision -- a review”, Published as a chapter in Parallel Algorithms for Machine Intelligence and Computer Vision, (Editors: V. Kumar, P. S. Gopalakrishnan, and L. N. Kanal), Springer-Verlag, 1990, pp. 271 – 309.
  
  

1989

• V. Chaudhary and J. K. Aggarwal, “Parallelism in low-level computer vision”, in Data Analysis in Astronomy III, Edited by V. Di Gesu, L. Scarsi, P. Crane, J. H. Friedman, S. Levialdi, and M.C. Macarone, Plenum Press, 1989, pp. 255—270.